HomeScience and Technology Journalvol. 4 no. 1 (2014)

Isolation, Characterization, and Evaluation of Plant Growth-Promoting Rhizobacteria from Rhizospheres of Sugarcane

Dionisio S. Bucao | Diana Rose De Leon

Discipline: Agriculture

 

Abstract:

The role of plant-growth promoting rhizobacteria (PGPR) in sustaining organic crop production system is indispensable. As such, this study characterized and evaluated the rhizobacteria isolated from the rhizospheres of wild lily sp. and sugarcane in the City of Batac, Ilocos Norte, Philippines. Initially, 15 bacterial isolates were purified and characterized morphologically. However, isolates with similar characteristics were discarded and only six were evaluated to determine their effect on the early growth of glutinous corn (Zea mays L.) through a pot experiment. Promising isolates were biochemically characterized to determine their classification. Corn plants inoculated with bacterial isolates were significantly taller than the control from 14 to 28 days after planting (DAE). At 28 DAE, the heights of the corn plants inoculated with LR10 (44.50cm), SC5 (43.00cm), SC4 (42.50cm), LR9 (42.33), and LB1 (40.67cm) were comparable to those inoculated with LR (39.33cm) but significantly taller than the control (35.37cm). The total biomass of corn plants inoculated with LB1 produced the heaviest (3.20g) followed by those inoculated with LR1 (2.57g) and SC4 (2.40g). Results of biochemical characterization indicate that isolate LB1 is classified as Paenibacillus polymyxa, LR1 as Bacillus subtilis, and SC4 as Bacillus subtilis.



References:

  1. Bais H.P., V.M. Loyola, H.E. Flores, and J.M. Vivanco. 2001. Root specific metabolism: The biology and biochemistry of underground organs. In vitro Cell DevBiol Plant 37:730–741.
  2. Berks, B.C., S.J. Ferguson, J.W.B. Moir, and D.J. Richardson. 1995 Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1232(3):97–173.
  3. Botelho, G.R. and L.C. Mendonça-Hagler. 2006. Fluorescent Pseudomonads associated with the rhizosphere of crops - an overview. Braz. J. Microbiol. 37:4
  4. Breed, R. and W.D. Dotterrer. 1916. The Number of Colonies Allowable On DS Bucao & DRM De Leon Plant Growth Promoting Rhizobacteria Satisfactory Agar Plates. J Bacteriol. 1:321-331.
  5. Brimecombe, M.J., F.A.A.M. De Leij, and M.L. James. 2007. In: The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface. 2nd edition CRC Press. Tylor and Francis Grp. 73-109.
  6. Çakmakçı, R. 2005a. Bitki gelifliminde fosfat çözücü bakterilerin önemi. Selçuk Üniv. Ziraat Fakültesi Dergisi 35: 93-108.
  7. Çakmakçı, R. 2005b. Bitki geliflimini teflvik eden rizobakterilerin tarımda kullanımı. Atatürk Üniv. Ziraat Fakültesi Dergisi 36: 97107.
  8. Çakmakçı, R., F. Dönmez, A. Aydın and F. Fahin. 2006. Growth promotion of plants by plant growth-promoting rhizobacteria under greenhouse and two different field soil conditions. Soil Biol. Biochem. 38: 1482-1487.
  9. Çakmakçı, R., F. Kantar and F. Fiahin. 2001. Effect of N2-fixing bacterial inoculations on yield of sugar beet and barley. J. Plant Nutr. Soil Sci. 164: 527- 531.
  10. Çakmakçı, R., F. Kantar and Ö.F. Algur. 1999. Sugar beet and barley yields in relation to Bacillus polymyxa and Bacillus megaterium var. phosphaticum inoculation. J. Plant Nutr. Soil Sci. 162:437442.
  11. Çakmakçı, R., M. Erat, Ü.G. Erdo¤an and M.F. Dönmez. 2007. The influence of PGPR on growth parameters, antioxidant and pentose phosphate oxidative cycle enzymes in wheat and spinach plants. J. Plant Nutr. Soil Sci. 170: 288-295.
  12. Canbolat, M.Y., S. Bilen, R. Çakmakçı, F. Sahin, and A. Aydin. 2006. Effect of plant growth-promoting bacteria and soil compaction on barley seedling growth, nutrient uptake, soil properties and rhizosphere microflora. Biol. Fertil. Soils. 42:350-357.
  13. Coelho, M.R.R., I. Von der Weid, V. Zahner and L. Seldin. 2003. Character of nitrogen-fixing Paeni bacillus species by polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis. FEMS Microbiol. Lett. 222: 243-250.
  14. de Freitas, J.R. 2000. Yield and N assimilation of winter wheat (Triticum aestivum L., var Norstar) inoculated with rhizobacteria. Pedobiologia 44: 97-104.
  15. de Freitas, J.R., M.R. Banerjee and J.J. Germida. 1997. Phosphatesolubilizing rhizobacteria enhance the growth and yield but not phosphorus uptake of canola (Brassica napus L.). Biol. Fertil. Soils 24: 358-364.
  16. Deepa C. K., S.G. Dastager, and A. Pandey. 2010. Isolation and characterization of plant growth promoting bacteria from non-rhizospheric soil and their effect on cowpea (Vigna unguiculata (L.) Walp.) seedling growth. World J. Microbiol. Biotechnol. 26 1233–1240.
  17. Dey R., K.K. Pal, D.M. Bhatt, and S.M. Chauhan. 200). Growth promotion and yield enhancement of peanut (Arachishypogaea L.) by application of plant growth promoting rhizobacteria. Microbiol. Res. 159 371–394 10.1016/j.micres.2004.08.004.
  18. Estabrook E.M. and J.I Yoder. 1998. Plant-plant communications: rhizosphere signaling between parasitic angiosperms and their hosts. Plant Physiol 116:1–7.
  19. Flores H.E., J.M. Vivanco, and V.M. Loyola-Vargas. 1999. “Radicle” biochemistry: The biology of root-specific metabolism. Trends Plant Sci 4: 220–226
  20. Giani, C., D. Wullbrandt, R. Rothert, and J. Meiwes. 1996. Pseudomonas aeruginosa and its use in a process for the biotechnological preparation of L-rhamnose.
  21. Gray E.J. and D.L. Smith. 2005. Intracelluler and extracellular PGRP: commonalities and distinctions in the plant-bacterium signaling processes. Soil Biol. Biochem. 37:395–412.
  22. Gumtang, R.J., M.F. Pampolino, T.P.Tuong, and D.S. Bucao. 1999. Groundwater dynamics and quality under intensive cropping systems. Experimental Agriculture. 35(2):153-166.
  23. Haque, N.A. and S.R. Dave. 2005. Ecology of phosphate solubilizers in semi-arid agricultural soils. lndian J Aiicrobiol., 45:27-32.
  24. Hardoim P.R., L.S. van Overbeek, and J.D. Elsas. 2008. Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol. 16 463–471 10.1016/j.tim.2008.07.008.
  25. Holmes, A., J. Govan, and R. Goldstein. 1998. Agricultural Use of Burkholderia (Pseudomonas) cepacia: A Threat to Human Health?
  26. Jansen, H.J. and Y. Bruinsma. 1989. Methodology for the quantification of root and rhizosphere nitrogen dynamics by exposure of shoots to 15 N labeled ammonia. Soil Biol. Biochem. 21:189.
  27. Kirk, J.L, L.A. Beaudette, H. Miranda, P. Moutoglis, J.N. Klironomos, H. Lee and J.T. Trevors. 2004. Methods of studying soil microbial diversity. Journal of Microbiological Methods. 58:169-188.
  28. Kim YC, J. Leveau, B.B. McSpadden-Gardener, E.A. Pierson, L.S. Pierson III and C.M. Ryu. 2011. The multifactorial basis for plant health promotion by plant- associated bacteria. Appl. Environ. Microbiol. 77:1548–1555.
  29. Lazarovits G. and J. Nowak. 1997. Rhizobacteria for improvement of plant growth and establishment. HortScience 32:188–192.
  30. Mansour F.A., H.S. Ildesuguy, and H.A. Hamedo. 1994. Studies on plant growth regulators and enzyme production by some bacteria. J. Qatar Univ. Sci. 14 81–288.
  31. Nardi S., G. Concheri, D. Pizzeghello, A. Sturaro, R. Rella, and G. Parvoli. 2000. Soil organic matter mobilization by root exudates. Chemosphere 5:653–658.
  32. Ozdemir, G., N. Ceyhan, and E. Manav. 2005. Utilization of an exopolysaccharide produced by Chryseomonas luteola TEM05 in alginate beads for adsorption of cadmium and cobalt ions. Bioresource Technology (Vol. 96) (No. 15) 1677-1682.
  33. Pal, S.S. 1998. Interaction of an acid tolerant strain of phosphate solubilizing bacteria with a few acid tolerant crops. Plant Soil 198: 169-177.
  34. Patten C. and B.R. Glick. 1996. Bacterial biosenthesis of indole-3-acetic acid. Can. J. Microbiol. 42 207–220 10.1139/m96-032.
  35. Persello-Cartieaux F., L. Nussaume and C. Robaglia. 2003. Tales from the underground: molecular plant-rhizobacterial interactions. Plant Cell Environ 26:189–199 Schroth MN and Hancock JG (1982) Disease-suppressive soil and root-colonizing bacteria. Science 216:1376-81.
  36. Poonguzhali S., M. Madhaiyan M., and T.M. Sa. 2008. Isolation and identification of phosphatesolubilizing bacteria from Chinese cabbage and their effect on growth and phosphorus utilization of plants. J. Microbiol. Biotechnol. 18 773–777.
  37. Rosado, A.S. and L. Seldin. 1993. Production of a potentially novel antimicrobial substance by Bacillus polymyxa. World J. Microbiol. Biotechnol. 9: 37-43.
  38. Sharma, S.B., R.Z. Sayyed, M.H. Trivedi, and T.A. Gobi. 2013. Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. Springer Plus 2: 587.
  39. Shishido M, C. Breuil, and C.P. Chanway. 1999. Endophytic colonization of spruce by growth-promoting rhizobacteria. FEMS Microbiol. Ecol. 29:191–196.
  40. Scialabba, N.E.H., and M. Müller-Lindenlauf. 2010. Organic agriculture and climate change. Renewable Agriculture and Food Systems, 25(02), 158-169.
  41. Singh, J. H. 2013. Plant Growth Promoting Rhizobacteria Potential Microbes for Sustainable Agriculture.
  42. Sturtz, A.V., B.R. Cristie, and S.Nodwrwak. 2000. Bacterial endophytes potential role in developing sustainable system of crop production. Crit Rev Plant Sci 19:1-30.
  43. Sudha, S.N., R. Jayakumar and V. Sekar. 1999. Introduction and expression of the cry1Ac gene of Bacillus thuringiensis in a cereal associated bacterium, Bacillus polymyxa. Curr. Microbiol. 38: 163-167.
  44. Sundara, B., V. Natarajan and K. Hari. 2002. Influence of phosphorus solubilizing bacteria on the changes in soil available phosphorus and sugarcane and sugar yield. Field Crop Res. 77: 43-49.
  45. Tate, R. L. III. 2000. Soil Microbiology. 2nd edition. John Wiley & Sons, Inc. 508pp.
  46. Tilman, D., K.G Cassman, P.A Matson, R. Naylor, and S. Polasky. 2002. Agricultural sustainability and intensive production practices. Nature, 418(6898), 671-677.
  47. Timmusk, S., B. Nicander, U. Granhall, and E. Tillberg. 1999. Cytokinin production by Paenibacillus polymyxa. Soil Biol. Biochem. 31: 1847-1852.
  48. Tiwari, P.K. and V.S. Thrimurthy. 2007. Isolation and characterization of the Pseudomonas fluorescens from rhizosphere of different crops. J Mycol Plant Pathol. 37:231–4.
  49. Tomasiewicz, D.M. 1980. The Most Suitable Number of Colonies on Plates for Counting. J Food Prot. 43(4):282-286.
  50. Vadakattu, G. and J. Paterson. 2006. Free-living bacteria lift soil nitrogen supply. Farming Ahead. 169:40.
  51. Vessey, K.J. 2003. Plant growth promoting rhizobacteria as biofertilizer. Plant Soil 235:571-586.
  52. Zahir A., S.A. Abbas, M. Khalid, and M. Arshad. 2000. Structure dependent microbially derived plant hormones by improving growth of maize seedlings. Pak. J. Biol. Sci. 3 289–291 10.3923/pjbs.2000.289.291.

Zumft, WG. 1997. Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev. 61(4):533-616.